Publications


Last updated March 21, 2022– Pulled automatically from my Google Scholar profile. See this post for how it works.

2022

D Shitrit, T Hackl, R Laurenceau, N Raho, MCG Carlson, G Sabehi et al. (2022) Genetic engineering of marine cyanophages reveals integration but not lysogeny in T7-like cyanophages, The ISME journal, 16 (2), 488-499
M Acker, SL Hogle, PM Berube, T Hackl, A Coe, R Stepanauskas et al. (2022) Phosphonate production by marine microbes: Exploring new sources and potential function, Proceedings of the National Academy of Sciences, 119 (11), e2113386119
SL Hogle, T Hackl, RM Bundy, J Park, B Satinsky, T Hiltunen, S Biller et al. (2022) Siderophores as an iron source for picocyanobacteria in deep chlorophyll maximum layers of the oligotrophic ocean, The ISME Journal, 1-11

2021

R Massana, A Labarre, D López-Escardó, A Obiol, F Bucchini, T Hackl et al. (2021) Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate, The ISME journal, 15 (1), 154-167
K Haslinger, T Hackl, KLJ Prather (2021) Rapid in vitro prototyping of O-methyltransferases for pathway applications in Escherichia coli, Cell chemical biology, 28 (6), 876-886. e4
R Martin, T Hackl, G Hattab, MG Fischer, D Heider (2021) MOSGA: modular open-source genome annotator, Bioinformatics, 36 (22-23), 5514-5515
T Hackl, F Trigodet, AM Eren, SJ Biller, JM Eppley, E Luo, A Burger et al. (2021) proovframe: frameshift-correction for long-read (meta) genomics, bioRxiv,
R Martin, H Dreßler, G Hattab, T Hackl, MG Fischer, D Heider (2021) MOSGA 2: Comparative genomics and validation tools, Computational and structural biotechnology journal, 19, 5504-5509

2020

G Palfalvi, T Hackl, N Terhoeven, TF Shibata, T Nishiyama et al. (2020) Genomes of the Venus flytrap and close relatives unveil the roots of plant carnivory, Current Biology, 30 (12), 2312-2320. e5
T Hackl, R Martin, K Barenhoff, S Duponchel, D Heider, MG Fischer (2020) Four high-quality draft genome assemblies of the marine heterotrophic nanoflagellate Cafeteria roenbergensis, Scientific data, 7 (1), 1-9
T Hackl, R Laurenceau, MJ Ankenbrand, C Bliem, Z Cariani, E Thomas et al. (2020) Novel integrative elements and genomic plasticity in ocean ecosystems, ,
T Hackl, S Duponchel, K Barenhoff, A Weinmann, MG Fischer (2020) Endogenous virophages populate the genomes of a marine heterotrophic flagellate, bioRxiv,
M Berjón-Otero, S Duponchel, T Hackl, M Fischer (2020) Visualization of giant virus particles using BONCAT labeling and STED microscopy, bioRxiv,

2018

SJ Biller, PM Berube, K Dooley, M Williams, BM Satinsky, T Hackl et al. (2018) Marine microbial metagenomes sampled across space and time, Scientific data, 5 (1), 1-7
PM Berube, SJ Biller, T Hackl, SL Hogle, BM Satinsky, JW Becker et al. (2018) Single cell genomes of Prochlorococcus, Synechococcus, and sympatric microbes from diverse marine environments, Scientific data, 5 (1), 1-11
MJ Ankenbrand, S Pfaff, N Terhoeven, M Qureischi, M Gündel, CL Weiß et al. (2018) chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data, The Journal of Open Source Software, 3 (21), 464
JH Grau, T Hackl, KP Koepfli, M Hofreiter (2018) Improving draft genome contiguity with reference-derived in silico mate-pair libraries, GigaScience, 7 (5), giy029
N Terhoeven, J Schultz, T Hackl (2018) reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome, Journal of Open Source Software,

2017

BM Slaby, T Hackl, H Horn, K Bayer, U Hentschel (2017) Metagenomic binning of a marine sponge microbiome reveals unity in defense but metabolic specialization, The ISME journal, 11 (11), 2465-2478
MJ Ankenbrand, S Hohlfeld, T Hackl, F Förster (2017) AliTV—interactive visualization of whole genome comparisons, PeerJ Computer Science, 3, e116

2016

MG Fischer, T Hackl (2016) Host genome integration and giant virus-induced reactivation of the virophage mavirus, Nature, 540 (7632), 288-291
T Hackl (2016) A draft genome for the Venus flytrap, Dionaea muscipula: Evaluation of assembly strategies for a complex Genome–Development of novel approaches and bioinformatics solutions, Universität Würzburg,

2014

T Hackl, R Hedrich, J Schultz, F Förster (2014) proovread : large-scale high-accuracy PacBio correction through iterative short read consensus, Bioinformatics, 30 (21), 3004-3011

2012

C Koetschan, T Hackl, T Müller, M Wolf, F Förster, J Schultz (2012) ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies, Molecular Phylogenetics and Evolution, 63 (3), 585-588
B Merget, C Koetschan, T Hackl, F Förster, T Dandekar, T Müller et al. (2012) The ITS2 database, JoVE (Journal of Visualized Experiments), e, e3806