A data set containing gene feature annotations for 6 endogenous virophages found in the genomes of the marine protist Cafeteria burkhardae.
Format
A data frame with 143 rows and 17 columns
- file_id
name of the file the data was read from
- seq_id
identifier of the sequence the feature appears on
- start
start of the feature on the sequence
- end
end of the feature on the sequence
- strand
reading orientation relative to sequence (+ or -)
- type
feature type (CDS, mRNA, gene, ...)
- feat_id
unique identifier of the feature
- introns
a list column with internal intron start/end positions
- parent_ids
a list column with parent IDs - feat_id's of parent features
- source
source of the annotation
- score
score of the annotation
- phase
For "CDS" features indicates where the next codon begins relative to the 5' start
- width
width of the feature
- gc_content
relative GC-content of the feature
- name
name of the feature
- Note
- geom_id
an identifier telling the which features should be plotted as on items (usually CDS and mRNA of same gene)
Source
Publication: doi:10.1101/2020.11.30.404863
Raw data: https://github.com/thackl/cb-emales
Derived & bundled data:
ex("emales/emales.gff")