Read files in different contexts — read

Usage

read_context(
  files,
  context,
  .id = "file_id",
  format = NULL,
  parser = NULL,
  ...
)

files: files to reads. Should all be of same format. In many cases, compressed files (.gz, .bz2, .xz, or .zip) are supported. Similarly, automatic download of remote files starting with http(s):// or ftp(s):// works in most cases.
context: the context ("seqs", "feats", "links") in which a given format should be read.
.id: the column with the name of the file a record was read from. Defaults to "file_id". Set to "bin_id" if every file represents a different bin.
format: specify a format known to gggenomes, such as gff3, gbk, ... to overwrite automatic determination based on the file extension (see def_formats() for full list).
parser: specify the name of an R function to overwrite automatic determination based on format, e.g. parser="read_tsv".
...: additional arguments passed on to the format-specific read function called down the line.

a tibble with the combined data from all files