Write a gff3 file from a tidy table
write_gff3(
feats,
file,
seqs = NULL,
type = NULL,
source = ".",
score = ".",
strand = ".",
phase = ".",
id_var = "feat_id",
parent_var = "parent_ids",
head = "##gff-version 3",
ignore_attr = c("introns", "geom_id")
)
tidy feat table
name of output file
a tidy sequence table to generate optional ##sequence-region
directives in the header
if no type column exists, use this as the default type
if no source column exists, use this as the default source
if no score column exists, use this as the default score
if no strand column exists, use this as the default strand
if no phase column exists, use this as the default phase
the name of the column to use as the GFF3 ID
tag
the name of the column to use as GFF3 Parent
tag
additional information to add to the header section
attributes not to be included in GFF3 tag list. Defaults
to internals: introns, geom_id
if (FALSE) {
write_gff3(emale_genes, "emales.gff", emale_seqs, id_var="feat_id")
}