Shift bins along the x-axis, i.e. left or right in the default plot layout. This is useful to align feats of interest in different bins.
shift(x, bins = everything(), by = 0, center = FALSE)Arguments
- x
gggenomes object
- bins
to shift left/right, select-like expression
- by
shift each bin by this many bases. Single value or vector of the same length as bins.
- center
horizontal centering
Examples
p0 <- gggenomes(emale_genes, emale_seqs) +
geom_seq() + geom_gene()
# Slide one bin left and one bin right
p1 <- p0 |> shift(2:3, by=c(-8000, 10000))
# align all bins to a target gene
mcp <- emale_genes |>
dplyr::filter(name == "MCP") |>
dplyr::group_by(seq_id) |>
dplyr::slice_head(n=1) # some have fragmented MCP gene, keep only first
p2 <- p0 |> shift(all_of(mcp$seq_id), by= -mcp$start) +
geom_gene(data=genes(name=="MCP"), fill="#01b9af")
library(patchwork)
p0 + p1 + p2
